Can you think of a western made game, made in the last 15 year or so, that had the main character commit rape? Neither can I. Witnessing rape (as in watching the scene happening without being able to do anything about it)? None, again. And yes, it's all about the presentation, we all know that. Just like how it was handled in the Witcher games. They don't use it as shock value, they just place it there as part of the story/background for some characters/events. No one is suggesting otherwise and it wouldn't have been shown graphically in Tomb Raider at all, it was just part of the setting.
Another thing about TR is people seem somewhat shocked by the death scenes. They're really not that gory in comparison to, say, Dead Space ones.
Also, how is that even offensive for women? You'd have to think all women are "hoes" to take it as an insult. It's fair to say that the "hoe" bit in this case was meant for the Fury boss fight and not everyone in general. There was nothing to be fixed at all, the developers/publishers just were forced into doing so because a group of "your rights end where my feelings begin" people have too much time on their hands and see "issues" everywhere. I don't even play the God of War games, but the whole thing has been utterly silly from the start.