Very good thread.
I enjoyed Shadowrunner, Deus Ex series and System Shock 2 and of course Blade Runner
Another cyberpunk indy Game I think has not been said: G String. Shooter made with No-life, er... I mean Half Life engine
And one of the first cyberpunk games I played years ago: Circuit's Edge (based in George Alec Effinger novels) This maybe too oldie (MS-DOS Game)