Honeslty, this list doesn't even bother me that much now. Most of these features are irrelevant or up to subjective opinion if they should stay. I would only name three things that are - in my opinion - objectively worse in the final version and they also damaged roleplaying aspect of this game.
1) Immersion. Entire point of first person locked view, ( which I like btw ) was to make me feel that V is me, and I am V. Immersion was the word on constant repeat through all these years. Oopsie, I never got the feeling that I can roleplay V, no matter how I'll try ( and I am pathetic roleplayer ). Decision making is flawed and V has predefined personality no matter our gender, sexuality, lifepaths or what wel choose to say. Final version of how much impact we have on our V is very flawed.
2) Cutscenes. I believe it was bad decision to get rid of all cutscenes. Thanks to them we would care how our V look like, or what is wearing. Little thing that adds so much immersion to our personal preferences.
3) Apartment\Romances\Sex. V's apartment is lame and pointless. It doesn't influence V lifestyle, potential romances or even any sort of involvement with other NPC's - like even someone knocking to our doors to talk in the middle of the night. It's just empty shell with few random activities. Let's take the shower shall we ? CLICK...