So after having this problem with fast travel, I decided to play the game anyways and finished the questline with triss and the mages, and found dandelion, etc. Just now tried to fast travel to white orchard and it worked. Went to the ship captain in novigrad and hired him to take me to skellige and it worked as well. Whatever the issue was has corrected itself, whether it was tied to those quests I have no idea, but I thought it worth mentioning.
Hey Thaine can you test something for me? Try to go back to novigrad from skellige and see if it will let you, because i did the same thing you did and the ship quest to take you there will work, its just i ended up stuck there. I believe its specifically trying to get back to novigrad that causes problems. Thanks in advance.
Side note: it definately has something to do with the quests after "Get Junior" because I loaded up an old save and it let me fast travel all over the place, load up one of my more recent saves and can't get back to Novigrad from Skellige or White Orchard.
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